Showing posts with label Bioassay. Show all posts
Showing posts with label Bioassay. Show all posts

Tuesday, September 16, 2014

Alzheimer's Diagnosis and the Role of Biomarkers

Xuemei Zhao, Principal Scientist Merck Research Laboratories 

Alzheimers disease biomarkers marker identification diagnosisAlzheimer’s disease (AD) is the most common form of dementia and it is increasingly prevalent in people over 65 years old.  In developed countries, AD places a tremendous burden on individuals and society.  To date, the cause and progression of the disease are not fully understood.  Although symptomatic therapy has been approved, there is no agent available to stop or reverse the disease.  Many therapeutic candidates are in development with some showing promising results.  Clinical diagnosis of AD relies on characteristic neurological and neuropsychological features.  A definite diagnosis of AD, however, can only be made by examining the neuropathological hallmarks of the disease, amyloid plaques and neurofibrillary tangles, at autopsy.  Therefore, biomarkers that aid in the diagnosis of AD would have great value in the development of AD therapeutics and clinical practice. 

Protein markers in cerebrospinal fluid (CSF) and neuroimaging markers have been shown to contribute to the diagnosis of AD.  CSF protein biomarkers include total tau, phosphorylated tau, and the 42 amino acid form of amyloid-b (Ab42).  Some recently developed positron emission tomography (PET) agents for amyloid deposition imaging are the 11C Pittsburgh Compound B (11C-PIB) and newer, FDA-approved amyloid imaging agents such as Amyvid and Flutemetamol.  Other AD imaging modalities are atrophy on structural magnetic resonance imaging (MRI), and hypometabolism on [18F]fluorodeoxyglucose (FDG) PET.  The validity of these biomarkers of amyloid plaque deposition and neurodegeneration owing to AD is supported by autopsy correlation studies.  Implementation of these markers in the clinic, however, is not ideal in that CSF collection by lumbar puncture is a relatively invasive procedure and PET/MRI measurements are expensive, facility restricted, and may be further limited by personal conditions such as pacemakers.  Therefore, identification of robust biomarkers in an easily accessible body fluid would aid in the early detection of the disease and facilitate development of disease-modifying agents.  


We performed two independent studies, discovery and validation, to identify AD markers by profiling proteins in human plasma using the aptamer-based SOMAscanTM technology.  Specifically, we aimed to identify markers with better performance than the best-performing CSF markers, tau and Ab42, to discriminate AD from non-demented controls.  We constructed a 5-protein classifier in the discovery study and demonstrated that the plasma protein classifier allowed the prediction of AD with 100.0% sensitivity, 80.0% specificity, and 90.0% accuracy in an independent validation study, matching or outperforming CSF tau and Ab42.  Individual-matched plasma and CSF samples were obtained at the same visit, allowing direct comparison of diagnostic performance between the plasma protein classifier and CSF protein biomarkers.  Moreover, the classifier also correctly predicted mild cognitive impairment (MCI), an early pre-dementia state of the disease, with 96.7% sensitivity, 80.0% specificity, and 92.5% accuracy.  These studies demonstrate that plasma proteins could be used effectively and accurately to contribute to the clinical diagnosis of AD.  Although additional and more diverse cohorts are needed for further validation of the robustness, including the support of post mortem diagnosis, the 5-protein classifier appears to be a promising blood test to contribute diagnosis of AD. 

Learn more about Xuemei's work in identifying Alzheimer's disease. 

You can hear more from Xuemei at this year's Bioassay and Bioanalytical Method Development event.  Join us October 20-22 in Boston, MA.  Download the agenda here to see what else is on tap.   

SAVE $100. Register here and use code XP1969BLOG

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Thursday, July 24, 2014

New Tool to Help Analyze Immunogenicity

The FDA suspended a clinical trial for a Factor IX protein in 2012 but a new web-based tool may help avoid that very issue in the future.  In a collaboration between Dartmouth, University of Rhode Island and EpiVax Inc., researchers have developed a tool that will help manufacturers of protein-based therapeutics improve the safety of their manufacturing process.  The tool, known as CHOPPI (CHO Protein Predicted Immunogenicity), predicts the product associated impurities will trigger an adverse response in patients.

Protein therapeutics are frequently produced in host cells such as CHO cells. These hot cell proteins have been known to contaminate and ultimately damage the final product.  The immunogenicity of a CHO protein is generally low based on the fact that it’s very similar to a human protein. However, some believe that “any protein is potentially immunogenic”.  The tool is expected to help predict these immune responses of these host cell proteins and ultimately aid protein engineers in accurately assessing the purity of the final product.

Immunogenicity Responses Analyze Predict Tool
Said Greg Paquette, Director of the Biotechnology and Medical Laboratory Science Programs, at URI, "The purity of these complex genetically-engineered therapeutic agents continues to be one of the biggest challenges for the biotechnology industry.”

More details can be found on this new tool in this Biotechnology and Bioengineering report.

Want more on the latest in immunogenicity?  Join us at Immunogenicity for Biotherapeutics conference this October 20-22 in Boston, MA. Download the agenda to see what’s on tap.

SAVE $100. Register here and use code XP1938BLOG.

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